diff --git a/packages/frontend/editor-ui/src/features/workflow-diff/WorkflowDiffModal.test.ts b/packages/frontend/editor-ui/src/features/workflow-diff/WorkflowDiffModal.test.ts
index b635a48a66..81958e8815 100644
--- a/packages/frontend/editor-ui/src/features/workflow-diff/WorkflowDiffModal.test.ts
+++ b/packages/frontend/editor-ui/src/features/workflow-diff/WorkflowDiffModal.test.ts
@@ -27,9 +27,15 @@ vi.mock('vue-router', () => ({
 
 vi.mock('@/features/workflow-diff/useViewportSync', () => ({
 	useProvideViewportSync: () => ({
-		selectedDetailId: vi.fn(),
+		selectedDetailId: ref(undefined),
 		onNodeClick: vi.fn(),
 	}),
+	useInjectViewportSync: () => ({
+		triggerViewportChange: vi.fn(),
+		onViewportChange: vi.fn(),
+		selectedDetailId: ref(undefined),
+		triggerNodeClick: vi.fn(),
+	}),
 }));
 
 vi.mock('@/features/workflow-diff/useWorkflowDiff', () => ({
@@ -89,27 +95,6 @@ const renderModal = createComponentRenderer(WorkflowDiffModal, {
 					</div>
 				`,
 			},
-			SyncedWorkflowCanvas: {
-				template: '<div><slot name="node" /><slot name="edge" /></div>',
-			},
-			WorkflowDiffAside: {
-				template: '<div><slot name="default" v-bind="{ outputFormat: \'unified\' }" /></div>',
-			},
-			Node: {
-				template: '<div class="canvas-node" />',
-			},
-			HighlightedEdge: {
-				template: '<div class="canvas-edge" />',
-			},
-			NodeDiff: {
-				template: '<div class="node-diff" />',
-			},
-			DiffBadge: {
-				template: '<span class="diff-badge" />',
-			},
-			NodeIcon: {
-				template: '<span class="node-icon" />',
-			},
 		},
 	},
 });
@@ -137,7 +122,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should mount successfully', async () => {
 		const { container } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -154,7 +138,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should initialize with correct props', () => {
 		const { container } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -173,7 +156,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should display changes button', async () => {
 		const { getByText } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -190,7 +172,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should open changes dropdown when clicking Changes button', async () => {
 		const { getByText } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -212,7 +193,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should render workflow panels', () => {
 		const { container } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -229,7 +209,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should render navigation buttons', () => {
 		const { container } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -258,7 +237,6 @@ describe('WorkflowDiffModal', () => {
 		workflowsStore.fetchWorkflow.mockResolvedValue(localWorkflow);
 
 		const { getByText } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -273,7 +251,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should render back button', () => {
 		const { container } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -289,7 +266,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should handle different workflow directions', () => {
 		const pullComponent = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -300,7 +276,6 @@ describe('WorkflowDiffModal', () => {
 		});
 
 		const pushComponent = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -317,7 +292,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should show empty state when no changes exist in tabs', async () => {
 		const { getByText } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -347,7 +321,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should show empty state for connectors tab when no connector changes', async () => {
 		const { getByText } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -376,7 +349,6 @@ describe('WorkflowDiffModal', () => {
 
 	it('should show empty state for settings tab when no settings changes', async () => {
 		const { getByText } = renderModal({
-			pinia: createTestingPinia(),
 			props: {
 				data: {
 					eventBus,
@@ -412,7 +384,6 @@ describe('WorkflowDiffModal', () => {
 			workflowsStore.fetchWorkflow.mockRejectedValue(new Error('Workflow not found'));
 
 			const { getByText } = renderModal({
-				pinia: createTestingPinia(),
 				props: {
 					data: {
 						eventBus,
@@ -433,7 +404,6 @@ describe('WorkflowDiffModal', () => {
 			workflowsStore.fetchWorkflow.mockResolvedValue(mockWorkflow);
 
 			const { getByText } = renderModal({
-				pinia: createTestingPinia(),
 				props: {
 					data: {
 						eventBus,
@@ -451,7 +421,6 @@ describe('WorkflowDiffModal', () => {
 
 		it('should handle push direction without crashing', async () => {
 			const { getByText } = renderModal({
-				pinia: createTestingPinia(),
 				props: {
 					data: {
 						eventBus,
@@ -468,7 +437,6 @@ describe('WorkflowDiffModal', () => {
 
 		it('should handle pull direction without crashing', async () => {
 			const { getByText } = renderModal({
-				pinia: createTestingPinia(),
 				props: {
 					data: {
 						eventBus,
diff --git a/packages/frontend/editor-ui/src/features/workflow-diff/WorkflowDiffModal.vue b/packages/frontend/editor-ui/src/features/workflow-diff/WorkflowDiffModal.vue
index e4b2f96556..167eaabe2c 100644
--- a/packages/frontend/editor-ui/src/features/workflow-diff/WorkflowDiffModal.vue
+++ b/packages/frontend/editor-ui/src/features/workflow-diff/WorkflowDiffModal.vue
@@ -13,6 +13,7 @@ import type { IWorkflowDb } from '@/Interface';
 import { useNodeTypesStore } from '@/stores/nodeTypes.store';
 import { useSourceControlStore } from '@/stores/sourceControl.store';
 import { useWorkflowsStore } from '@/stores/workflows.store';
+import { removeWorkflowExecutionData } from '@/utils/workflowUtils';
 import { N8nButton, N8nHeading, N8nIconButton, N8nRadioButtons, N8nText } from '@n8n/design-system';
 import type { BaseTextKey } from '@n8n/i18n';
 import { useI18n } from '@n8n/i18n';
@@ -86,8 +87,8 @@ const sourceWorkFlow = computed(() => (props.data.direction === 'push' ? remote
 const targetWorkFlow = computed(() => (props.data.direction === 'push' ? local : remote));
 
 const { source, target, nodesDiff, connectionsDiff } = useWorkflowDiff(
-	computed(() => sourceWorkFlow.value.state.value?.workflow),
-	computed(() => targetWorkFlow.value.state.value?.workflow),
+	computed(() => removeWorkflowExecutionData(sourceWorkFlow.value.state.value?.workflow)),
+	computed(() => removeWorkflowExecutionData(targetWorkFlow.value.state.value?.workflow)),
 );
 
 type SettingsChange = {
diff --git a/packages/frontend/editor-ui/src/features/workflow-diff/useWorkflowDiff.ts b/packages/frontend/editor-ui/src/features/workflow-diff/useWorkflowDiff.ts
index 2250af4816..09f8fdb80d 100644
--- a/packages/frontend/editor-ui/src/features/workflow-diff/useWorkflowDiff.ts
+++ b/packages/frontend/editor-ui/src/features/workflow-diff/useWorkflowDiff.ts
@@ -1,6 +1,6 @@
 import _pick from 'lodash-es/pick';
 import _isEqual from 'lodash-es/isEqual';
-import type { CanvasConnection } from '@/types';
+import type { CanvasConnection, CanvasNode } from '@/types';
 import type { INodeUi, IWorkflowDb } from '@/Interface';
 import type { MaybeRefOrGetter, Ref, ComputedRef } from 'vue';
 import { useWorkflowsStore } from '@/stores/workflows.store';
@@ -134,15 +134,17 @@ function createWorkflowDiff(
 
 		return {
 			workflow: workflowRef,
-			nodes: nodes.value.map((node) => {
+			nodes: nodes.value.map((node: CanvasNode) => {
 				node.draggable = false;
 				node.selectable = false;
 				node.focusable = false;
 				return node;
 			}),
-			connections: connections.value.map((connection) => {
+			connections: connections.value.map((connection: CanvasConnection) => {
 				connection.selectable = false;
 				connection.focusable = false;
+				// Remove execution data from connection labels in diff context
+				connection.label = '';
 				return connection;
 			}),
 		};
diff --git a/packages/frontend/editor-ui/src/utils/workflowUtils.test.ts b/packages/frontend/editor-ui/src/utils/workflowUtils.test.ts
new file mode 100644
index 0000000000..387fc47ef1
--- /dev/null
+++ b/packages/frontend/editor-ui/src/utils/workflowUtils.test.ts
@@ -0,0 +1,124 @@
+import { removeWorkflowExecutionData } from './workflowUtils';
+import type { IWorkflowDb } from '@/Interface';
+import type { INodeIssues } from 'n8n-workflow';
+
+describe('workflowUtils', () => {
+	describe('removeWorkflowExecutionData', () => {
+		it('should return undefined if workflow is undefined', () => {
+			expect(removeWorkflowExecutionData(undefined)).toBeUndefined();
+		});
+
+		it('should remove execution-related data from nodes and workflow-level pinData', () => {
+			const mockWorkflow: IWorkflowDb = {
+				id: 'test-workflow',
+				name: 'Test Workflow',
+				active: false,
+				isArchived: false,
+				createdAt: '2023-01-01T00:00:00Z',
+				updatedAt: '2023-01-01T00:00:00Z',
+				nodes: [
+					{
+						id: 'node1',
+						name: 'Test Node',
+						type: 'test-type',
+						typeVersion: 1,
+						position: [100, 100],
+						parameters: {},
+						// Execution-related data that should be removed
+						issues: {} as INodeIssues,
+						pinData: { someData: 'test' },
+					},
+					{
+						id: 'node2',
+						name: 'Clean Node',
+						type: 'another-type',
+						typeVersion: 1,
+						position: [200, 200],
+						parameters: {},
+						// No execution data
+					},
+				],
+				connections: {},
+				// Workflow-level execution data that should be removed
+				pinData: { node1: [{ json: { data: 'execution-result' } }] },
+				versionId: '1.0',
+			};
+
+			const result = removeWorkflowExecutionData(mockWorkflow);
+
+			expect(result).toBeDefined();
+			expect(result!.nodes).toHaveLength(2);
+
+			// First node should have execution data removed
+			expect(result!.nodes[0]).toEqual({
+				id: 'node1',
+				name: 'Test Node',
+				type: 'test-type',
+				typeVersion: 1,
+				position: [100, 100],
+				parameters: {},
+			});
+
+			// Second node should remain unchanged (no execution data to remove)
+			expect(result!.nodes[1]).toEqual({
+				id: 'node2',
+				name: 'Clean Node',
+				type: 'another-type',
+				typeVersion: 1,
+				position: [200, 200],
+				parameters: {},
+			});
+
+			// Workflow-level pinData should be removed
+			expect(result!.pinData).toBeUndefined();
+
+			// Workflow metadata should be preserved
+			expect(result!.id).toBe('test-workflow');
+			expect(result!.name).toBe('Test Workflow');
+			expect(result!.connections).toEqual({});
+		});
+
+		it('should preserve all other node properties', () => {
+			const mockWorkflow: IWorkflowDb = {
+				id: 'test-workflow',
+				name: 'Test Workflow',
+				active: false,
+				isArchived: false,
+				createdAt: '2023-01-01T00:00:00Z',
+				updatedAt: '2023-01-01T00:00:00Z',
+				nodes: [
+					{
+						id: 'node1',
+						name: 'Complex Node',
+						type: 'complex-type',
+						typeVersion: 2,
+						position: [150, 250],
+						parameters: { param1: 'value1', param2: { nested: true } },
+						color: '#ff0000',
+						notes: 'Some notes',
+						disabled: true,
+						// Execution data to be removed
+						issues: {} as INodeIssues,
+						pinData: { result: [{ json: { test: 'data' } }] },
+					},
+				],
+				connections: {},
+				versionId: '2.0',
+			};
+
+			const result = removeWorkflowExecutionData(mockWorkflow);
+
+			expect(result!.nodes[0]).toEqual({
+				id: 'node1',
+				name: 'Complex Node',
+				type: 'complex-type',
+				typeVersion: 2,
+				position: [150, 250],
+				parameters: { param1: 'value1', param2: { nested: true } },
+				color: '#ff0000',
+				notes: 'Some notes',
+				disabled: true,
+			});
+		});
+	});
+});
diff --git a/packages/frontend/editor-ui/src/utils/workflowUtils.ts b/packages/frontend/editor-ui/src/utils/workflowUtils.ts
new file mode 100644
index 0000000000..c16ed14654
--- /dev/null
+++ b/packages/frontend/editor-ui/src/utils/workflowUtils.ts
@@ -0,0 +1,27 @@
+import type { IWorkflowDb, INodeUi } from '@/Interface';
+
+/**
+ * Removes execution data from workflow nodes and workflow-level execution data
+ * to ensure clean comparisons in diffs. This prevents execution status, run data,
+ * pinned data, and other runtime information from appearing in workflow difference
+ * comparisons.
+ */
+export function removeWorkflowExecutionData(
+	workflow: IWorkflowDb | undefined,
+): IWorkflowDb | undefined {
+	if (!workflow) return workflow;
+
+	// Remove workflow-level execution data and clean up nodes
+	const { pinData, ...cleanWorkflow } = workflow;
+
+	const sanitizedWorkflow: IWorkflowDb = {
+		...cleanWorkflow,
+		nodes: workflow.nodes.map((node: INodeUi) => {
+			// Create a clean copy without execution-related data
+			const { issues, pinData, ...cleanNode } = node;
+			return cleanNode;
+		}),
+	};
+
+	return sanitizedWorkflow;
+}